STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO3166Putative ABC transporter, ATP-binding protein. (251 aa)    
Predicted Functional Partners:
CBO0087
Similar to Clostridium tetani ABC transporter permease protein ctc00486 SWALL:Q898G6 (EMBL:AE015937) (404 aa) fasta scores: E(): 1e-60, 47.66 38d in 407 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, permease components tte1198 SWALL:Q8RAL5 (EMBL:AE013082) (405 aa) fasta scores: E(): 4.1e-65, 50.73 38d in 406 aa.
   0.921
CBO3167
Putative ABC transporter permease.
  
 
 0.873
CBO1222
Putative ABC transporter, permease protein.
 
 0.784
CBO2278
ABC transporter, ATP-binding transmembrane protein.
    
0.731
CBO3168
Putative integral membrane protein.
  
   0.677
CBO2140
Putative ABC transporter, permease protein.
 
 
 0.673
CBO2146
ABC transporter, permease protein; CDS overlaps 20 nt at the N-terminus with CBO2147.
 
 
 0.671
CBO1308
Putative ABC transporter, ATP-binding/permease protein.
    
0.641
CBO0322
Similar to Bacillus cereus ABC transporter permease protein bc1995 SWALL:Q81EI1 (EMBL:AE017004) (626 aa) fasta scores: E(): 2e-63, 34.07 38d in 628 aa.
 
 
 0.592
CBO1397
Putative ABC transporter, permease protein.
 
 
 0.588
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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