STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3167Putative ABC transporter permease. (541 aa)    
Predicted Functional Partners:
CBO3166
Putative ABC transporter, ATP-binding protein.
  
 
 0.883
CBO0904
ABC transporter, ATP-binding/permease protein.
  
 
 0.660
CBO3168
Putative integral membrane protein.
  
  
 0.575
CBO3398
Putative exported protein.
   
 
 0.553
CBO0274
Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00394 SWALL:Q898P9 (EMBL:AE015937) (256 aa) fasta scores: E(): 1.2e-81, 95.31 38d in 256 aa.
  
 
 0.504
CBO0321
Similar to Bacillus cereus ABC transporter ATP-binding protein bc4839 SWALL:Q816J1 (EMBL:AE017013) (250 aa) fasta scores: E(): 7.3e-58, 68.16 38d in 245 aa.
  
 
 0.504
CBO1391A
Putative ABC transporter, ATP-binding protein.
  
 
 0.504
CBO1396
ABC transporter, ATP-binding protein.
  
 
 0.504
CBO2147
ABC transporter, ATP-binding protein; CDS overlaps 20 nt at the C-terminus with CBO2146.
  
 
 0.504
CBO0086
Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00485 SWALL:Q898G7 (EMBL:AE015937) (238 aa) fasta scores: E(): 1.8e-49, 64.31 38d in 227 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, ATPase components phnl2 or tte1199 SWALL:Q8RAL4 (EMBL:AE013082) (231 aa) fasta scores: E(): 9e-49, 62.55 38d in 227 aa.
  
 
 0.496
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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