Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO3173Putative TPR-family repetative protein. (115 aa)    
Predicted Functional Partners:
CBO3436
TPR-repeat-containing protein.
 
 
 0.774
CBO1757
Putative exonuclease.
 
     0.742
CBO2657
Putative flagellar hook-length control protein.
  
     0.719
CBO3398
Putative exported protein.
 
 
   0.704
CBO0405
Putative transcriptional regulator; Similar to Bacillus thuringiensis transcriptional activator NprR nprR SWALL:Q9AQ53 (EMBL:AF220563) (425 aa) fasta scores: E(): 0.00056, 21.33 38d in 436 aa, and to Bacillus subtilis response regulator aspartate phosphatase B RapB or SpoOP or bsu36690 SWALL:RAPB_BACSU (SWALL:P70962) (377 aa) fasta scores: E(): 0.014, 20.15 id in 377 aa.
  
 
   0.680
CBO3314
Putative nuclease.
  
     0.673
CBO0191
Putative adenylate cyclase; Similar to Clostridium acetobutylicum adenilate cyclase, class2 cac0650 SWALL:Q97LB2 (EMBL:AE007580) (180 aa) fasta scores: E(): 8.5e-37, 64.77 38d in 176 aa, and to Clostridium perfringens hypothetical protein Cpe1352 cpe1352 SWALL:Q8XKP2 (EMBL:AP003190) (187 aa) fasta scores: E(): 6.5e-36, 62.92 38d in 178 aa.
  
     0.658
CBO3113
Putative capsular polysaccharide biosynthesis TPR repeats containing protein.
 
 
 0.641
CBO0413
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc00544 SWALL:Q898B9 (EMBL:AE015937) (381 aa) fasta scores: E(): 8.2e-56, 44.75 38d in 362 aa.
  
    0.636
cotS-2
Putative spore coat protein S.
  
     0.636
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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