Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO3174Conserved integral membrane protein. (394 aa)    
Predicted Functional Partners:
recX
Conserved hypothetical protein; Modulates RecA activity; Belongs to the RecX family.
  
    0.807
CBO3176
Putative zinc-binding protease; Belongs to the peptidase M16 family.
       0.761
CBO0109
Spore coat protein; Similar to Bacillus subtilis spore coat protein S CotS or bsu30900 SWALL:COTS_BACSU (SWALL:P46914) (351 aa) fasta scores: E(): 4.6e-06, 19.63 38d in 331 aa, and to Clostridium acetobutylicum spore coat protein CotS related cac2910 SWALL:Q97F43 (EMBL:AE007788) (335 aa) fasta scores: E(): 3.8e-69, 52.25 38d in 333 aa.
  
     0.629
cotS-2
Putative spore coat protein S.
  
     0.624
CBO0766
ABC transporter, permease protein; Highly similar to downstream CDS CBO0767 (89.9 id).
  
     0.581
CBO3559
Putative transcriptional regulator.
  
     0.568
CBO0767
Putative ABC transporter, permease protein; Highly similar to upstream CDS CBO0766 (89.9 38d).
  
     0.563
CBO0114
Spore coat protein; Similar to Bacillus subtilis YtaA protein SWALL:O34656 (EMBL:Z99119) (357 aa) fasta scores: E(): 1.3e-20, 28.1 38d in 306 aa, and to Clostridium tetani spore coat protein ctc00273 SWALL:Q899B2 (EMBL:AE015936) (337 aa) fasta scores: E(): 8.4e-95, 71.85 38d in 334 aa. Also similar to CBO0112 (32.390 38d), CBO0109 (31.077).
  
     0.562
CBO3173
Putative TPR-family repetative protein.
  
    0.555
CBO3177
Putative integral membrane protein.
       0.503
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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