STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3192Putative ferredoxin. (64 aa)    
Predicted Functional Partners:
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
     
 0.765
hymB
Putative electron-transferring subunit of iron-only hydrogenase.
     
 0.668
nifJ2
Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).
     
 0.658
CBO0089
Ferredoxin; Similar to Thermotoga maritima ferredoxin Fdx or tm0927 SWALL:FER_THEMA (SWALL:P46797) (60 aa) fasta scores: E(): 0.00016, 38.98 38d in 59 aa, and to Clostridium perfringens ferredoxin Fer or cpe2511 SWALL:Q8XHH3 (EMBL:AP003194) (62 aa) fasta scores: E(): 3.4e-07, 45.76 38d in 59 aa.
  
     0.563
CBO0106
Radical SAM superfamily protein; Similar to Clostridium tetani Fe-s oxidoreductase ctc00266 SWALL:Q899B9 (EMBL:AE015936) (460 aa) fasta scores: E(): 2.1e-137, 71.08 38d in 460 aa, and to Clostridium acetobutylicum moaa/nirj family fe-s oxidoreductase cac2791 SWALL:Q97FE9 (EMBL:AE007776) (461 aa) fasta scores: E(): 2.8e-119, 61.6 38d in 461 aa.
  
   
 0.483
CBO0083
Putative exported protein; Similar to Clostridium acetobutylicum hypothetical protein Cac2984 SWALL:Q97EX2 (EMBL:AE007795) (221 aa) fasta scores: E(): 6.8e-24, 36.92 38d in 195 aa, and to Clostridium tetani conserved membrane-associated protein ctc00250 SWALL:Q899D3 (EMBL:AE015936) (196 aa) fasta scores: E(): 6.2e-19, 34.02 38d in 194 aa.
       0.461
CBO0084
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc00252 SWALL:Q899D1 (EMBL:AE015936) (279 aa) fasta scores: E(): 2e-49, 52.51 38d in 278 aa, and to Clostridium acetobutylicum hypothetical protein Cac2983 cac2983 SWALL:Q97EX3 (EMBL:AE007795) (284 aa) fasta scores: E(): 1.4e-40, 45.93 38d in 283 aa.
       0.461
CBO0088
Putative ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
       0.461
CBO3193
Conserved hypothetical protein.
       0.460
CBO3194
Conserved hypothetical protein.
       0.460
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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