STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hbd3-hydroxybutyryl-CoA dehydrogenase. (276 aa)    
Predicted Functional Partners:
thl
acetyl-CoA acetyltransferase (thiolase); Belongs to the thiolase-like superfamily. Thiolase family.
 0.999
crt
3-hydroxybutyryl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 0.999
bcd
butyryl-CoA dehydrogenase.
 0.985
ctfB
Butyrate-acetoacetate CoA-transferase subunit B.
  
 
 0.974
ctfA
Butyrate-acetoacetate CoA-transferase subunit A.
  
 
 0.954
CBO2843
acyl-CoA dehydrogenase.
 
 0.933
acdB
acyl-CoA dehydrogenase, short-chain specific.
 0.923
acdA
Putative acyl-CoA dehydrogenase.
 0.916
buk1
Butyrate kinase 1; Also similar to CBO3428 (57.670 38d. in 352 aa overlap); Belongs to the acetokinase family.
     
 0.800
ptb2
Phosphate butyryltransferase; Also similar to CBO3118 (53.37 38d).
     
 0.789
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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