Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBO3221Putative ABC transporter periplasmic binding protein. (413 aa)    
Predicted Functional Partners:
CBO1515
ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.901
CBO1516
ABC transporter, permease protein.
  
 
 0.898
CBO1517
ABC transporter, permease protein.
  
 
 0.857
oppA
ABC transporter, oligopeptide-binding protein.
   
 
 0.768
CBO0963
Putative molybdenum ABC transporter, ATP-binding protein.
  
 
 0.746
tupC
ATPase component of tungstate ABC transporter.
  
 
 0.746
CBO1781
Putative exported protein; No significant database matches.
  
     0.714
cbiQ
Putative cobalt transport protein.
  
 
  0.702
gerAC
Spore germination protein.
  
     0.681
CBO3222
Putative secreted protein.
       0.657
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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