Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO3252Hypothetical protein. (46 aa)    
Predicted Functional Partners:
CBO3251
Putative secreted protein.
       0.773
CBO3253
Hypothetical protein.
       0.773
CBO3250
Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.
       0.615
CBO3254
Putative lipoprotein; Appears to have an extended C-terminus compared to most homologues.
       0.520
CBO3255
Putative lipoprotein.
       0.495
CBO3256
Putative permease.
       0.477
CBO3257
Hypothetical protein.
       0.477
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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