Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
CBO3254Putative lipoprotein; Appears to have an extended C-terminus compared to most homologues. (366 aa)    
Predicted Functional Partners:
CBO3255
Putative lipoprotein.
 
     0.947
CBO3256
Putative permease.
 
     0.933
CBO3247
Putative ABC transporter ATP-binding protein.
 
 
 0.927
CBO3250
Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.
 
  
 0.890
CBO3253
Hypothetical protein.
 
     0.888
CBO3172
Putative ABC transporter permease.
 
 
 0.850
CBO1369
ABC transporter, permease protein.
 
 
 0.843
CBO1370
ABC transporter, ATP-binding protein; This CDS is shorter at the C-terminus relative to most database matches.
  
 
 0.740
CBO3246
Conserved hypothetical protein.
 
     0.737
CBO3171
Putative ABC transporter ATP binding protein.
  
 
 0.730
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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