CBO3256 protein (Clostridium botulinum A ATCC 3502)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CBO3256

Putative permease. (363 aa)

Predicted Functional Partners:

CBO3255

0.949

CBO3254

0.933

CBO3253

0.879

CBO3250

0.871

CBO3257

0.810

CBO3246

0.682

cotA

0.532

CBO3247

0.527

CBO3251

0.486

CBO3252

0.477

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBO3246	CBO3247	CBO3246	CBO3247	Conserved hypothetical protein.	Putative ABC transporter ATP-binding protein.	0.795
CBO3246	CBO3250	CBO3246	CBO3250	Conserved hypothetical protein.	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	0.776
CBO3246	CBO3253	CBO3246	CBO3253	Conserved hypothetical protein.	Hypothetical protein.	0.752
CBO3246	CBO3254	CBO3246	CBO3254	Conserved hypothetical protein.	Putative lipoprotein; Appears to have an extended C-terminus compared to most homologues.	0.737
CBO3246	CBO3255	CBO3246	CBO3255	Conserved hypothetical protein.	Putative lipoprotein.	0.786
CBO3246	CBO3256	CBO3246	CBO3256	Conserved hypothetical protein.	Putative permease.	0.682
CBO3247	CBO3246	CBO3247	CBO3246	Putative ABC transporter ATP-binding protein.	Conserved hypothetical protein.	0.795
CBO3247	CBO3250	CBO3247	CBO3250	Putative ABC transporter ATP-binding protein.	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	0.633
CBO3247	CBO3253	CBO3247	CBO3253	Putative ABC transporter ATP-binding protein.	Hypothetical protein.	0.620
CBO3247	CBO3254	CBO3247	CBO3254	Putative ABC transporter ATP-binding protein.	Putative lipoprotein; Appears to have an extended C-terminus compared to most homologues.	0.927
CBO3247	CBO3255	CBO3247	CBO3255	Putative ABC transporter ATP-binding protein.	Putative lipoprotein.	0.631
CBO3247	CBO3256	CBO3247	CBO3256	Putative ABC transporter ATP-binding protein.	Putative permease.	0.527
CBO3250	CBO3246	CBO3250	CBO3246	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	Conserved hypothetical protein.	0.776
CBO3250	CBO3247	CBO3250	CBO3247	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	Putative ABC transporter ATP-binding protein.	0.633
CBO3250	CBO3251	CBO3250	CBO3251	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	Putative secreted protein.	0.626
CBO3250	CBO3252	CBO3250	CBO3252	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	Hypothetical protein.	0.615
CBO3250	CBO3253	CBO3250	CBO3253	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	Hypothetical protein.	0.919
CBO3250	CBO3254	CBO3250	CBO3254	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	Putative lipoprotein; Appears to have an extended C-terminus compared to most homologues.	0.890
CBO3250	CBO3255	CBO3250	CBO3255	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	Putative lipoprotein.	0.883
CBO3250	CBO3256	CBO3250	CBO3256	Putative ABC transporter, permease protein; 5 probable transmembrane helices predicted for CBO3249 by TMHMM2.0 at aa 28-46, 89-106, 119-138, 143-162 and 183-205.	Putative permease.	0.871