Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBO3274Putative transglycosylase, SLT family. (223 aa)    
Predicted Functional Partners:
CBO1869
Putative exported protein; Similar to C-terminal region of Clostridium tetani N-acetylmuramoyl-L-alanine amidase-like protein ctc01112 SWALL:Q895Z8 (EMBL:AE015939) (266 aa) fasta scores: E(): 1.3e-27, 71.42 38d in 112 aa.
 
 
  
 0.778
CBO3275
Conserved hypothetical protein.
     
 0.698
rluB-2
Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.
  
    0.660
CBO3606
Putative exported peptidase.
  
 0.587
FlgG-2
Putative flagellar basal-body rod protein.
 
 
 0.499
CBO2226
Putative chemotaxis MotB protein.
 
  
 0.480
motB
Putative chemotaxis MotB protein.
 
  
 0.479
CBO3272
Conserved hypothetical protein.
       0.479
flhB
Flagellar biosynthetic protein; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
 
  
 0.453
ssBb
Single-strand binding protein.
  
  
 0.449
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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