Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO3317Putative integral membrane protein. (296 aa)    
Predicted Functional Partners:
CBO3318
Putative ABC transporter substrate-binding lipoprotein.
       0.804
fliY
Flagellar motor switch protein FliY.
    
 
 0.798
CBO3316
Conserved hypothetical protein.
 
     0.790
CBO3319
Conserved hypothetical protein; Contains 2 domain matches to Pfam domain PF01966 which usually only occurs in single copies.
   
   0.561
rimI
Putative acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
 
     0.510
CBO0549
Putative phage-related protein; Similar to the C-terminal region of Xestia c-nigrum granulosis virus orf42 SWALL:Q9PZ01 (EMBL:AF162221) (379 aa) fasta scores: E(): 0.85, 22.81 38d in 149 aa.
  
     0.443
CBO3320
Conserved hypothetical protein.
       0.430
yeaZ
Putative peptidase.
       0.430
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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