STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3318Putative ABC transporter substrate-binding lipoprotein. (302 aa)    
Predicted Functional Partners:
CBO1361
Putative ABC transporter, permease protein.
 
  
 0.938
CBO1362
Putative ABC transporter, ATP-binding protein.
 
  
 0.912
CBO3317
Putative integral membrane protein.
       0.855
CBO3316
Conserved hypothetical protein.
 
     0.789
CBO3319
Conserved hypothetical protein; Contains 2 domain matches to Pfam domain PF01966 which usually only occurs in single copies.
       0.717
cobW
Putative cobalamin biosynthesis protein.
  
  
 0.655
yeaZ
Putative peptidase.
  
    0.636
CBO3320
Conserved hypothetical protein.
       0.625
rimI
Putative acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
       0.625
rpmB
50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.597
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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