STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO3328Putative phosphatase. (330 aa)    
Predicted Functional Partners:
CBO2128
Putative MarR-family transcriptional regulator.
  
     0.714
CBO2401
Putative membrane protein.
 
    0.662
CBO2779
Putative membrane protein; No significant database matches.
  
     0.638
ntpC
V-type sodium ATP synthase subunit C.
    
 
 0.601
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.558
CBO2230
Conserved hypothetical protein.
  
     0.548
cypC
Fatty acid beta-hydroxylating cytochrome P450.
  
 0.533
CBO0933
Putative nitroreductase.
   
    0.524
ntpI
V-type sodium ATP synthase subunit I.
    
   0.521
ntpG
V-type sodium ATP synthase subunit G; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.483
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.