STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3333Desulfoferrodoxin. (124 aa)    
Predicted Functional Partners:
ftnA
Ferritin; Iron-storage protein.
 
  
 0.852
rub
Rubredoxin.
 
  
 0.796
CBO3334
Conserved hypothetical protein.
       0.722
rbr
Putative rubrerythrin.
 
  
 0.688
CBO2843
acyl-CoA dehydrogenase.
  
  
 0.660
norV-2
Anaerobic nitric oxide reductase flavorubredoxin.
  
 0.588
CBO2842
Putative flavoprotein.
 
  
 0.584
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
     
 0.538
fprA1
Putative flavoprotein.
 
  
 0.532
norV
Anaerobic nitric oxide reductase flavorubredoxin.
 
  
 0.531
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.