STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO3335Cyclic beta 1-2 glucan synthetase. (2882 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.735
lysC-2
Aspartokinase; Belongs to the aspartokinase family.
     
 0.656
lysC
Putative aspartokinase; Belongs to the aspartokinase family.
     
 0.618
CBO0250
Amino-acid permease; Similar to Bacillus subtilis amino-acid permease RocE or bsu40330 SWALL:ROCE_BACSU (SWALL:P39137) (467 aa) fasta scores: E(): 1.8e-73, 41.99 38d in 462 aa, and to Clostridium perfringens lysine specific permease cpe1166 SWALL:Q8XL76 (EMBL:AP003189) (489 aa) fasta scores: E(): 9.5e-137, 69.37 38d in 480 aa.
      
 0.463
dapB-2
Dihydrodipicolinate reductase; Catalyzes the conversion of 4-hydroxy-tetrahydrodipicolinate (HTPA) to tetrahydrodipicolinate; Belongs to the DapB family.
      
 0.451
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
      
 0.439
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
      
 0.437
CBO3338
Putative aspartyl aminopeptidase.
       0.425
Alr
Alanine racemase; Similar to Treponema pallidum alanine racemase Alr or tp0681 SWALL:ALR_TREPA (SWALL:Q56346) (377 aa) fasta scores: E(): 9.7e-37, 35.93 38d in 384 aa, and to Clostridium acetobutylicum alanine racemase 1 Alr1 or cac0492 SWALL:ALR1_CLOAB (SWALL:Q97LR2) (386 aa) fasta scores: E(): 8e-87, 58.98 38d in 395 aa.
      
 0.402
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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