STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3349Two-component sensor kinase. (461 aa)    
Predicted Functional Partners:
CBO3349A
Two-component response regulator.
 
 
 0.965
CBO0365
Two-component response regulator; Similar to Enterococcus faecium regulatory protein VanR vanR SWALL:VANR_ENTFC (SWALL:Q06239) (231 aa) fasta scores: E(): 2.2e-41, 51.94 38d in 231 aa.
 
 0.857
CBO0610
Two-component response regulator.
 
 
 0.856
CBO1613
Two-component response regulator.
 
 
 0.852
CBO2285
Two-component response regulator.
 
 
 0.852
CBO0352
Two-component response regulator; Similar to Bacillus subtilis alkaline phosphatase synthesis transcriptional regulatory protein PhoP or bsu29110 SWALL:PHOP_BACSU (SWALL:P13792) (240 aa) fasta scores: E(): 1.6e-34, 46.72 38d in 229 aa.
 
 
 0.835
CBO0970
Two-component response regulator.
 
 
 0.833
cssR
Two-component response regulator; Similar to Bacillus subtilis transcriptional regulatory protein CssR or bsu33010 SWALL:CSSR_BACSU (SWALL:O32192) (225 aa) fasta scores: E(): 1.1e-40, 50.89 id in 224 aa.
 
 
 0.828
CBO0776
Two-component response regulator.
 
   0.825
CBO1041
Two-component response regulator.
   0.825
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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