CBO3362 protein (Clostridium botulinum A ATCC 3502)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CBO3362

Putative integrase/recombinase. (199 aa)

Predicted Functional Partners:

CBO2364

0.740

CBO0171

0.524

whiA

0.493

ftsK

0.475

CBO3361

0.463

cobB

0.458

soj

0.457

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBO0171	CBO2364	CBO0171	CBO2364	Putative phosphoribosyl transferase; Similar to Haemophilus influenzae competence protein F ComF or hi0434 SWALL:COMF_HAEIN (SWALL:P31773) (229 aa) fasta scores: E(): 4.7e-05, 25.83 38d in 209 aa,and to Clostridium acetobutylicum predicted amidophosphoribosyltransferase, ComC b.suntilis ortholog cac2852 SWALL:Q97F89 (EMBL:AE007783) (226 aa) fasta scores: E(): 6.3e-31, 46.63 38d in 208 aa.	Phage integrase; Belongs to the 'phage' integrase family.	0.591
CBO0171	CBO3362	CBO0171	CBO3362	Putative phosphoribosyl transferase; Similar to Haemophilus influenzae competence protein F ComF or hi0434 SWALL:COMF_HAEIN (SWALL:P31773) (229 aa) fasta scores: E(): 4.7e-05, 25.83 38d in 209 aa,and to Clostridium acetobutylicum predicted amidophosphoribosyltransferase, ComC b.suntilis ortholog cac2852 SWALL:Q97F89 (EMBL:AE007783) (226 aa) fasta scores: E(): 6.3e-31, 46.63 38d in 208 aa.	Putative integrase/recombinase.	0.524
CBO2364	CBO0171	CBO2364	CBO0171	Phage integrase; Belongs to the 'phage' integrase family.	Putative phosphoribosyl transferase; Similar to Haemophilus influenzae competence protein F ComF or hi0434 SWALL:COMF_HAEIN (SWALL:P31773) (229 aa) fasta scores: E(): 4.7e-05, 25.83 38d in 209 aa,and to Clostridium acetobutylicum predicted amidophosphoribosyltransferase, ComC b.suntilis ortholog cac2852 SWALL:Q97F89 (EMBL:AE007783) (226 aa) fasta scores: E(): 6.3e-31, 46.63 38d in 208 aa.	0.591
CBO2364	CBO3362	CBO2364	CBO3362	Phage integrase; Belongs to the 'phage' integrase family.	Putative integrase/recombinase.	0.740
CBO2364	cobB	CBO2364	CBO0924	Phage integrase; Belongs to the 'phage' integrase family.	Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	0.454
CBO2364	ftsK	CBO2364	CBO2408	Phage integrase; Belongs to the 'phage' integrase family.	DNA translocase FtsK.	0.476
CBO2364	whiA	CBO2364	CBO3375	Phage integrase; Belongs to the 'phage' integrase family.	Conserved hypothetical protein; Involved in cell division and chromosome segregation.	0.493
CBO3361	CBO3362	CBO3361	CBO3362	Putative signaling protein.	Putative integrase/recombinase.	0.463
CBO3362	CBO0171	CBO3362	CBO0171	Putative integrase/recombinase.	Putative phosphoribosyl transferase; Similar to Haemophilus influenzae competence protein F ComF or hi0434 SWALL:COMF_HAEIN (SWALL:P31773) (229 aa) fasta scores: E(): 4.7e-05, 25.83 38d in 209 aa,and to Clostridium acetobutylicum predicted amidophosphoribosyltransferase, ComC b.suntilis ortholog cac2852 SWALL:Q97F89 (EMBL:AE007783) (226 aa) fasta scores: E(): 6.3e-31, 46.63 38d in 208 aa.	0.524
CBO3362	CBO2364	CBO3362	CBO2364	Putative integrase/recombinase.	Phage integrase; Belongs to the 'phage' integrase family.	0.740
CBO3362	CBO3361	CBO3362	CBO3361	Putative integrase/recombinase.	Putative signaling protein.	0.463
CBO3362	cobB	CBO3362	CBO0924	Putative integrase/recombinase.	Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	0.458
CBO3362	ftsK	CBO3362	CBO2408	Putative integrase/recombinase.	DNA translocase FtsK.	0.475
CBO3362	soj	CBO3362	CBO3639	Putative integrase/recombinase.	Chromosome partitioning protein (sporulation initiation inhibitor protein).	0.457
CBO3362	whiA	CBO3362	CBO3375	Putative integrase/recombinase.	Conserved hypothetical protein; Involved in cell division and chromosome segregation.	0.493
cobB	CBO2364	CBO0924	CBO2364	Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Phage integrase; Belongs to the 'phage' integrase family.	0.454
cobB	CBO3362	CBO0924	CBO3362	Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Putative integrase/recombinase.	0.458
cobB	soj	CBO0924	CBO3639	Cobyrinic acid a,c-diamide synthase; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.	Chromosome partitioning protein (sporulation initiation inhibitor protein).	0.638
ftsK	CBO2364	CBO2408	CBO2364	DNA translocase FtsK.	Phage integrase; Belongs to the 'phage' integrase family.	0.476
ftsK	CBO3362	CBO2408	CBO3362	DNA translocase FtsK.	Putative integrase/recombinase.	0.475