Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO3381Putative membrane protein. (202 aa)    
Predicted Functional Partners:
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
     
 0.808
CBO3075
Conserved hypothetical protein.
 
    0.737
CBO3379
Putative phosphoesterase.
     
 0.629
CBO2230
Conserved hypothetical protein.
  
     0.589
CBO2084
Conserved hypothetical protein; CDS is truncated 37 residues at the C-terminus relative to its closest fasta match.
  
     0.532
CBO3383
Penicillin-binding protein.
     
 0.525
CBO3384
Putative cell division protein (stage V sporulation protein E); Belongs to the SEDS family.
     
 0.525
CBO3385
Putative phosphopeptide-binding membrane protein.
     
 0.523
murB
UDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation.
       0.516
CBO2691
Conserved hypothetical protein.
  
     0.484
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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