STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBO3389Putative membrane protein (pseudogene); 7 probable transmembrane helices predicted for CBO3388 by TMHMM2.0 at aa 4-18, 39-61, 66-88, 93-115,125-147, 168-190 and 212-234; Belongs to the peptidase S41A family. (401 aa)    
Predicted Functional Partners:
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
   
 
 0.741
CBO2929
Putative exported protein.
  
 
 0.654
rseP
Putative membrane-associated protease.
 
  
 0.624
CBO2702
Putative glycosyl transferase.
  
 
 0.615
nifJ2
Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).
   
 
 0.613
ftsX
Cell division protein; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.576
ftsE
Cell division ATP-binding protein; Part of the ABC transporter FtsEX involved in cellular division.
       0.576
CBO3173
Putative TPR-family repetative protein.
  
 
 0.561
CBO3440
TPR-repeat-containing protein.
  
 
 0.561
CBO1056
Putative glycosyltransferase (gene fragment); Pfam match to entry PF00534 Glycos_transf_1,Glycosyl transferases group 1, score 42.2, E-value 2.3e-11.
  
 
 0.521
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.