STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3407Putative membrane-associated phosphatase. (197 aa)    
Predicted Functional Partners:
upk1
Putative undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
 
 0.916
upk2
Putative undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
 
 0.916
CBO0350
Putative phosphatase; Similar to Clostridium perfringens hypothetical protein Cpe1026 SWALL:Q8XLL5 (EMBL:AP003189) (185 aa) fasta scores: E(): 3.9e-34, 54.7 38d in 170 aa.
 
  
 
0.915
uppS-2
Putative undecaprenyl pyrophosphate synthetase.
  
 
 0.911
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.911
mraY2
phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
    
 0.906
ntpC
V-type sodium ATP synthase subunit C.
    
 
 0.682
CBO2766A
Putative glucose translocase.
  
  
 0.589
ntpG
V-type sodium ATP synthase subunit G; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.540
cypC
Fatty acid beta-hydroxylating cytochrome P450.
   
 0.449
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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