STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO3409Two-component response regulator; PS00217 Sugar transport proteins signature 2. (160 aa)    
Predicted Functional Partners:
CBO3325
Conserved hypothetical protein.
  
     0.494
CBO2817
Conserved hypothetical protein.
  
     0.425
CBO0362
Similar to Clostridium tetani putative aminotransferase ctc01359 SWALL:Q895C0 (EMBL:AE015940) (440 aa) fasta scores: E(): 6.2e-91, 55.55 38d in 432 aa.
  
     0.415
CBO2632
Putative zinc dependent phospholipase C.
  
     0.406
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.