STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO3418Sorbitol dehydrogenase. (349 aa)    
Predicted Functional Partners:
CBO1991
PTS system, IIbc component.
     
 0.901
srlM
Glucitol operon activator protein.
 
     0.826
sorC
Sorbitol operon regulator.
 
   
 0.741
srlA
PTS system, glucitol/sorbitol-specific IIC2 component.
 
     0.730
srlE
PTS system, glucitol/sorbitol-specific IIBC component.
 
     0.727
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
  
  
 0.636
srlD
Sorbitol-6-phosphate 2-dehydrogenase.
 
  
 0.605
srlB
PTS system, glucitol/sorbitol-specific IIA component.
 
     0.546
nifJ2
Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).
     
 0.541
CBO3411
Putative transaldolase.
  
 
 0.453
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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