Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO3429Conserved hypothetical protein. (532 aa)    
Predicted Functional Partners:
CBO3430
Putative exported protein.
       0.828
dacA
Conserved hypothetical protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.828
CBO3432
Putative spore cortex-lytic enzyme; Similar to the C-terminal region of Bacillus cereus spore cortex-lytic enzyme precursor sleb or bc2753 SWALL:SLEB_BACCR (SWALL:P70874) (259 aa) fasta scores: E(): 2.1e-13, 42.52 38d in 127 aa.
       0.646
ptb2
Phosphate butyryltransferase; Also similar to CBO3118 (53.37 38d).
       0.642
buk2
Butyrate kinase 2; Also similar to CBO3426 (57.670 38d. in 352 aa overlap); Belongs to the acetokinase family.
       0.642
buk1
Butyrate kinase 1; Also similar to CBO3428 (57.670 38d. in 352 aa overlap); Belongs to the acetokinase family.
       0.601
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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