Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cwlDGermination-specific N-acetylmuramoyl-L-alanine amidase. (234 aa)    
Predicted Functional Partners:
pdaA
Probable polysaccharide deacetylase.
  
   
 0.697
spoIV
Putative stage IV sporulation protein.
  
   
 0.683
CBO0398
Putative membrane associated peptidase; Similar to Clostridium tetani conserved membrane protein ctc00530 SWALL:Q898D2 (EMBL:AE015937) (345 aa) fasta scores: E(): 3.5e-47, 48.22 38d in 338 aa.
   
   0.644
fumA-2
Similar to N-terminal region of Escherichia coli fumarate hydratase class I, anaerobic FumB or b4122 SWALL:FUMB_ECOLI (SWALL:P14407) (548 aa) fasta scores: E(): 3.7e-09, 35.62 38d in 233 aa.
       0.610
yqfC
Conserved hypothetical protein.
      
 0.605
CBO3444
Putative sodium/phosphate cotransporter.
       0.559
spoIID
Similar to Bacillus subtilis stage ii sporulation protein D SpoIID or spoIIC or bsu36750 SWALL:SP2D_BACSU (SWALL:P07372) (343 aa) fasta scores: E(): 2.9e-17, 35.07 id in 345 aa, and to Clostridium tetani stage II sporulation protein D ctc00315 SWALL:Q898X2 (EMBL:AE015936) (376 aa) fasta scores: E(): 1.9e-56,48.17 38d in 357 aa.
 
  
 0.550
ylbJ
Putative membrane protein.
  
   
 0.540
yabP
Conserved hypothetical protein.
  
  
 0.537
CBO1751
Bacteriophage endolysin (N-acetylmuramoyl-L-alanine amidase); Also similar to CBO1653 (81.6 38d), CBO2325 (86.1 id.), CBO3016 (50.0 38d.).
  
     0.519
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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