Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO3574TetR-family transcriptional regulator. (190 aa)    
Predicted Functional Partners:
CBO3572
Nitroreductase (pseudogene); 1 probable transmembrane helix predicted for CBO3571 by TMHMM2.0 at aa 7-29.
 
   
 0.591
CBO2070
Conserved hypothetical protein.
  
    0.529
CBO0430
Similar to Bacteroides thetaiotaomicron transcriptional regulator bt0507 SWALL:Q8AAF8 (EMBL:AE016928) (202 aa) fasta scores: E(): 9.5e-06,26.31 38d in 190 aa.
  
     0.503
CBO3575
AraC-family transcriptional regulator.
 
     0.488
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.474
CBO3221
Putative ABC transporter periplasmic binding protein.
  
     0.414
CBO3573
Putative iron-sulfur flavoprotein.
       0.414
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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