Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yyaC-2Conserved hypothetical protein. (193 aa)    
Predicted Functional Partners:
gpr
Germination protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.856
spoVT
Stage V sporulation protein T.
  
  
 0.759
spoIIIAE
Stage III sporulation protein AE.
  
     0.747
spoIIIAD
Stage III sporulation protein AD.
  
     0.746
spoIIE
Putative stage II sporulation protein.
  
   
 0.724
ytvI
Putative membrane protein.
  
    0.717
spoIIID
Similar to Bacillus subtilis stage III sporulation protein D SpoIIID or bsu36420 SWALL:SP3D_BACSU (SWALL:P15281) (93 aa) fasta scores: E(): 1.1e-16, 62.65 id in 83 aa, and to Clostridium acetobutylicum stage iii sporulation protein D SpoIIID cac2859 SWALL:Q97F82 (EMBL:AE007783) (84 aa) fasta scores: E(): 9e-24, 89.28 id in 84 aa.
  
     0.695
spoIIIAG
Stage III sporulation protein AG.
  
     0.691
gerAA-2
Spore germination protein.
  
     0.690
CBO0123
Similar to Bacillus cereus spore germination protein GerlA SWALL:Q93N70 (EMBL:AF387344) (492 aa) fasta scores: E(): 7.4e-71, 40.43 38d in 502 aa, and to Clostridium tetani spore germination protein b1 ctc00285 SWALL:Q899A1 (EMBL:AE015936) (492 aa) fasta scores: E(): 3.1e-111, 64.34 38d in 502 aa.
  
     0.688
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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