STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK77467.1methylmalonyl-CoA epimerase/lactoylglutathione lyase; COG0346. (137 aa)    
Predicted Functional Partners:
ABK77884.1
methylmalonyl-CoA epimerase/lactoylglutathione lyase; COG0346.
     
  0.900
trpB
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine.
   
  0.827
ABK77476.1
Threonine dehydratase; COG1171.
   
 0.821
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
  0.800
ABK78287.1
NADH-ubiquinone oxidoreductase, subunit I; COG1143.
  
  
 0.734
ABK78318.1
Succinate dehydrogenase, subunit D; COG2142.
  
  
 0.628
ABK78177.1
Nitroreductase; COG0778.
  
  
 0.626
ABK78285.1
NADH-ubiquinone oxidoreductase, subunit D; COG0649; Belongs to the complex I 49 kDa subunit family.
  
  
 0.625
ABK77116.1
methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding); COG2185.
    
 0.616
ABK77110.1
methylmalonyl-CoA mutase, N-terminal domain/subunit; COG1884.
    
 0.614
Your Current Organism:
Cenarchaeum symbiosum
NCBI taxonomy Id: 414004
Other names: C. symbiosum A, Cenarchaeum symbiosum A
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