STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps13Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement; Belongs to the universal ribosomal protein uS13 family. (227 aa)    
Predicted Functional Partners:
rps3ae
Ribosomal protein S3AE; COG1890; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.999
rps15
Ribosomal protein S15P/S13E; COG0184.
  
 0.999
rps17e
Ribosomal protein S17E; COG1383; Belongs to the eukaryotic ribosomal protein eS17 family.
   
 0.999
ABK76753.1
Ribosomal protein L40e; Belongs to the eukaryotic ribosomal protein eL40 family.
  
 0.999
ABK76897.1
Conserved hypothetical protein.
   
 0.999
rpl7ae
Ribosomal protein H6-type; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs.
  
 0.999
rps28e
Ribosomal protein S28E/S33; COG2053; Belongs to the eukaryotic ribosomal protein eS28 family.
   
 0.999
rpl24e
Ribosomal protein L24E; Binds to the 23S rRNA.
   
 
 0.999
rpl15
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.999
rpl30
Ribosomal protein L30/L7E; COG1841.
  
 
 0.999
Your Current Organism:
Cenarchaeum symbiosum
NCBI taxonomy Id: 414004
Other names: C. symbiosum A, Cenarchaeum symbiosum A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.