STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABK78508.1Short-chain alcohol dehydrogenase; Related to ketoacyl reductase; COG0300; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (255 aa)    
Predicted Functional Partners:
ABK78507.1
Hypothetical protein.
       0.804
ABK77821.1
Short-chain alcohol dehydrogenase; COG1028.
 
 
 0.718
ABK78506.1
GTPase; COG1100.
 
 
 0.660
ABK78419.1
FAD/FMN-containing dehydrogenase; COG0277.
  
  
 0.500
ABK78578.1
Short-chain alcohol dehydrogenase; COG1028.
 
 
 0.477
ABK77614.1
8-amino-7-oxononanoate synthase; COG0156.
   
 
 0.433
truB
Pseudouridine synthase; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily.
 
     0.417
cmk
Cytidylate kinase; COG1102.
 
     0.414
ABK78119.1
Xaa-Pro aminopeptidase; COG0006; Belongs to the peptidase M24B family.
  
    0.400
Your Current Organism:
Cenarchaeum symbiosum
NCBI taxonomy Id: 414004
Other names: C. symbiosum A, Cenarchaeum symbiosum A
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