STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG81824.1Rhamnogalacturonyl hydrolase YesR. (376 aa)    
Predicted Functional Partners:
SFG81647.1
Alginate lyase.
 
     0.788
SFG81850.1
Sialate O-acetylesterase.
       0.746
SFG83239.1
Alginate lyase.
  
     0.710
SFG81619.1
alpha-D-xyloside xylohydrolase; Belongs to the glycosyl hydrolase 31 family.
 
  
  0.685
SFG81802.1
Prolyl oligopeptidase family protein.
 
     0.652
SFG83219.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.633
SFG81778.1
Right handed beta helix region.
 
     0.604
SFG81371.1
Starch-binding associating with outer membrane.
  
     0.597
SFG81699.1
poly(beta-D-mannuronate) lyase.
 
  
  0.574
SFG81723.1
poly(beta-D-mannuronate) lyase.
 
  
  0.570
Your Current Organism:
Pedobacter insulae
NCBI taxonomy Id: 414048
Other names: DSM 18684, KCTC 12820, P. insulae, Pedobacter insulae Yoon et al. 2007, strain DS-139
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.