STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG90982.1TonB-linked outer membrane protein, SusC/RagA family. (1082 aa)    
Predicted Functional Partners:
SFG90956.1
SusD family protein.
 
     0.929
SFH37652.1
SusD family protein.
 
     0.795
SFH11770.1
Starch-binding associating with outer membrane.
  
     0.729
SFG56126.1
Starch-binding associating with outer membrane.
  
     0.714
SFH37696.1
Hypothetical protein.
  
     0.712
SFG90937.1
Thiol-disulfide isomerase or thioredoxin.
       0.701
SFH37726.1
Hypothetical protein.
  
     0.696
SFG91913.1
Starch-binding associating with outer membrane.
  
     0.672
SFH00015.1
Starch-binding associating with outer membrane.
  
     0.659
SFG91950.1
Starch-binding associating with outer membrane.
  
     0.652
Your Current Organism:
Pedobacter insulae
NCBI taxonomy Id: 414048
Other names: DSM 18684, KCTC 12820, P. insulae, Pedobacter insulae Yoon et al. 2007, strain DS-139
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.