STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH06203.1Ribosomal protein S18 acetylase RimI. (170 aa)    
Predicted Functional Partners:
SFG64827.1
Protein N-acetyltransferase, RimJ/RimL family.
 
 
 
  0.824
SFH06182.1
AraC-type DNA-binding protein.
       0.757
SFH06220.1
Acetyltransferase (isoleucine patch superfamily).
 
     0.594
SFH06249.1
Cyclophilin-like.
 
     0.575
SFH06166.1
Flavodoxin.
 
    0.556
SFH06316.1
Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains.
 
    0.516
SFH06231.1
Hypothetical protein.
       0.504
SFH06153.1
AraC-type DNA-binding protein.
       0.495
SFH06264.1
Hypothetical protein.
 
     0.445
Your Current Organism:
Pedobacter insulae
NCBI taxonomy Id: 414048
Other names: DSM 18684, KCTC 12820, P. insulae, Pedobacter insulae Yoon et al. 2007, strain DS-139
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.