STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH23475.1Trehalose 6-phosphate synthase /trehalose 6-phosphatase. (741 aa)    
Predicted Functional Partners:
SFH01425.1
Trehalose 6-phosphate synthase /trehalose 6-phosphatase.
 
 
0.994
SFH01403.1
Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family.
 
  
 0.929
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.768
SFH40249.1
1,4-alpha-glucan branching enzyme; Belongs to the glycosyl hydrolase 13 family.
  
 0.768
SFG93086.1
Glycosyl transferase family 2.
  
 0.727
SFG92480.1
Hypothetical protein.
   
    0.717
SFH01384.1
Glucose-1-phosphate adenylyltransferase.
     
 0.712
SFG92289.1
Glycosidase.
  
 
 0.705
SFG92342.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.705
SFH01812.1
Alpha-amylase.
  
 
 0.705
Your Current Organism:
Pedobacter insulae
NCBI taxonomy Id: 414048
Other names: DSM 18684, KCTC 12820, P. insulae, Pedobacter insulae Yoon et al. 2007, strain DS-139
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.