STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH29380.1Probable DNA metabolism protein. (252 aa)    
Predicted Functional Partners:
SFH29394.1
Putative DNA modification/repair radical SAM protein.
 
    0.961
SFH29411.1
Uncharacterized protein.
       0.799
SFH29362.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
       0.713
SFH29458.1
Protein of unknown function.
   
   0.602
SFH29426.1
Helix-turn-helix domain-containing protein.
       0.590
SFH29445.1
Putative N6-adenine-specific DNA methylase.
  
    0.500
SFH29327.1
Inorganic phosphate transporter, PiT family.
       0.463
SFH29345.1
Hypothetical protein.
       0.463
SFG77128.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
  
    0.430
Your Current Organism:
Pedobacter insulae
NCBI taxonomy Id: 414048
Other names: DSM 18684, KCTC 12820, P. insulae, Pedobacter insulae Yoon et al. 2007, strain DS-139
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.