STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH42875.1Pectate lyase, PelA/Pel-15E family. (345 aa)    
Predicted Functional Partners:
SFH42926.1
Pectinesterase.
  
 0.912
SFH42961.1
Lysophospholipase L1.
  
 0.882
SFH42939.1
Pectinesterase.
  
 0.856
SFH42903.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
  
  0.811
SFH42912.1
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.713
SFH42889.1
Unsaturated rhamnogalacturonyl hydrolase.
 
     0.709
SFH42951.1
Lysophospholipase L1.
 
  
  0.643
SFH24072.1
Polygalacturonase; Belongs to the glycosyl hydrolase 28 family.
 
  
  0.619
SFH42990.1
Starch-binding associating with outer membrane.
 
     0.560
SFH42860.1
Tagaturonate reductase.
       0.533
Your Current Organism:
Pedobacter insulae
NCBI taxonomy Id: 414048
Other names: DSM 18684, KCTC 12820, P. insulae, Pedobacter insulae Yoon et al. 2007, strain DS-139
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.