STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOE87084.1HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)    
Predicted Functional Partners:
OOE86322.1
IMP dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.861
OOE86323.1
GMP synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.827
OOE79729.1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.799
BZG73_11745
YgiQ family radical SAM protein; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.762
OOE85559.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.711
ubiF
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the formation of 2-octaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4-benzoquinol from 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol; functions in the biosynthesis of ubiquinone or coenzyme Q; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.709
OOE82772.1
Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.628
OOE85723.1
Aquaporin; Involved in the transport of glycerol into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.626
OOE86333.1
Riboflavin biosynthesis protein RibD; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.612
OOE83563.1
Glycogen phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.608
Your Current Organism:
Salinivibrio siamensis
NCBI taxonomy Id: 414286
Other names: JCM 14472, PCU 301, PCU:301, S. siamensis, Salinivibrio siamensis Chamroensaksri et al. 2009, strain ND1-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.