STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOE80606.1Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
OOE80605.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.940
OOE84586.1
KTSC domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.905
OOE82247.1
lysine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.905
metG
methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.888
OOE87074.1
glutamate--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.886
OOE86960.1
PTS fructose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.885
OOE79110.1
proline--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.884
OOE83815.1
asparagine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.882
OOE87869.1
tRNA glutamyl-Q(34) synthetase GluQRS; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.873
OOE84913.1
leucine--tRNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.873
Your Current Organism:
Salinivibrio siamensis
NCBI taxonomy Id: 414286
Other names: JCM 14472, PCU 301, PCU:301, S. siamensis, Salinivibrio siamensis Chamroensaksri et al. 2009, strain ND1-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.