STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK64608.1PFAM: amine oxidase; Rieske [2Fe-2S] domain protein; KEGG: syn:sll0254 bifunctional lycopene cyclase/dioxygenase. (647 aa)    
Predicted Functional Partners:
ACK65105.1
KEGG: mar:MAE_07730 hypothetical protein.
  
  
 0.927
ACK64641.1
PFAM: FAD dependent oxidoreductase; KEGG: mar:MAE_54440 FAD dependent oxidoreductase.
     
 0.904
ACK65674.1
PFAM: fatty acid desaturase; KEGG: mar:MAE_07370 beta-carotene hydroxylase.
     
 0.904
ACK65176.1
PFAM: Rieske [2Fe-2S] domain protein; KEGG: ava:Ava_1827 Rieske (2Fe-2S) region.
 
     0.775
ACK64607.1
Gamma-glutamyltransferase; KEGG: mar:MAE_14710 gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltransferase; PFAM: gamma-glutamyltranspeptidase.
       0.550
ACK64609.1
KEGG: scl:sce1966 hypothetical protein.
       0.531
ACK67919.1
KEGG: ter:Tery_2505 hypothetical protein.
  
     0.472
ACK64386.1
KEGG: ter:Tery_3347 hypothetical protein.
  
     0.439
ACK65361.1
KEGG: syn:slr0723 hypothetical protein.
  
     0.434
Your Current Organism:
Rippkaea orientalis
NCBI taxonomy Id: 41431
Other names: Cyanothece sp. PCC 8801, R. orientalis PCC 8801, Rippkaea orientalis PCC 8801, Synechococcus sp. PCC 8801, Synechococcus sp. RF-1
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