STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK66035.1Transposase; KEGG: mar:MAE_36400 transposase. (332 aa)    
Predicted Functional Partners:
ACK66573.1
KEGG: amr:AM1_4382 hypothetical protein.
  
     0.562
ACK66034.1
KEGG: mar:MAE_30610 hypothetical protein.
       0.546
ACK67285.1
PFAM: regulatory protein TetR; KEGG: amr:AM1_3018 transcriptional regulator, TetR family, putative.
  
     0.512
ACK66916.1
PFAM: band 7 protein; KEGG: mar:MAE_17740 band 7 protein.
  
     0.475
ACK66917.1
PFAM: band 7 protein; KEGG: mar:MAE_36860 hypothetical protein.
  
     0.461
ACK68115.1
PFAM: protein of unknown function DUF1460; KEGG: mar:MAE_12240 hypothetical protein.
  
     0.461
ACK65645.1
Capsular polysaccharide biosynthesis protein-like protein; KEGG: mar:MAE_08430 hypothetical protein.
  
     0.425
Your Current Organism:
Rippkaea orientalis
NCBI taxonomy Id: 41431
Other names: Cyanothece sp. PCC 8801, R. orientalis PCC 8801, Rippkaea orientalis PCC 8801, Synechococcus sp. PCC 8801, Synechococcus sp. RF-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.