Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACK67182.1PFAM: protein of unknown function DUF29; KEGG: cyb:CYB_1910 hypothetical protein. (146 aa)    
Predicted Functional Partners:
ACK66507.1
PFAM: protein of unknown function DUF29; KEGG: syn:slr1814 hypothetical protein.
  
     0.772
ACK66297.1
PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: syn:sll1033 probable protein phosphatase.
    
 0.725
ACK65444.1
PFAM: protein of unknown function DUF29; KEGG: mar:MAE_22100 hypothetical protein.
  
     0.707
ACK67183.1
PFAM: Extracellular ligand-binding receptor; KEGG: mar:MAE_32490 periplasmic binding protein.
       0.532
Your Current Organism:
Rippkaea orientalis
NCBI taxonomy Id: 41431
Other names: Cyanothece sp. PCC 8801, R. orientalis PCC 8801, Rippkaea orientalis PCC 8801, Synechococcus sp. PCC 8801, Synechococcus sp. RF-1
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