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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
faf1Fas (TNFRSF6) associated factor 1. (674 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
    
 
0.981
LOC111235178
Uncharacterized protein.
    
 0.969
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.966
ubxn1
UBX domain protein 1.
   
 
 0.963
fadd
Uncharacterized protein.
   
 0.953
ubxn6
UBX domain protein 6.
    
 
 0.948
aspscr1
ASPSCR1 tether for SLC2A4, UBX domain containing.
    
 
 0.947
LOC111229268
Zgc:136908; Belongs to the AAA ATPase family.
   
 0.946
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
   
 0.946
nsfl1c
NSFL1 (p97) cofactor (p47).
    
 
 0.933
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.