Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC111222069Calreticulin. (425 aa)    
Predicted Functional Partners:
pdia3
Protein disulfide-isomerase.
   
 0.993
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
   
 0.985
tapbp
TAP binding protein (tapasin), tandem duplicate 2.
    
 0.963
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
 0.955
LOC111223318
Protein disulfide-isomerase.
   
 0.954
LOC111221615
Low density lipoprotein receptor-related protein 1Aa.
    
 0.921
LOC111218980
Low density lipoprotein receptor-related protein 1Ab.
    
 0.921
pdia4
Protein disulfide-isomerase.
   
 0.916
C1QA
Complement C1q A chain.
     
 0.907
LOC111231152
Calreticulin.
  
  
 
0.901
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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