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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tor3aTorsin family 3, member A. (367 aa)    
Predicted Functional Partners:
rft1
Protein RFT1 homolog; May be involved in N-linked oligosaccharide assembly. Belongs to the RFT1 family.
      
 0.591
mrps18a
Mitochondrial ribosomal protein S18A.
      
 0.587
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
   
  0.534
LOC111232097
Uncharacterized protein.
   
 
 0.532
LOC111232098
Uncharacterized protein.
   
 
 0.532
cops2
COP9 signalosome subunit 2.
   
 
  0.509
ENSSDUP00000008452
COP9 signalosome subunit 8.
   
 
  0.503
LOC111235778
NPHS2 stomatin family member, podocin.
      
 0.495
COPS6
COP9 signalosome subunit 6.
   
 
  0.488
cep350
Centrosomal protein 350.
      
 0.465
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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