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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rxylt1Ribitol xylosyltransferase 1. (442 aa)    
Predicted Functional Partners:
b4gat1
Beta-1,4-glucuronyltransferase 1.
   
 
 0.951
fktn
Fukutin.
  
 
 0.660
b3galnt2
Hexosyltransferase.
   
  
 0.539
fkrp
Fukutin related protein.
      
 0.536
pomk
Protein O-mannose kinase.
      
 0.534
Pomgnt2
Protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-).
      
 0.533
pomgnt1
Protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-).
    
 
 0.528
pomt1
Protein-O-mannosyltransferase 1.
   
  
 0.528
crppa
CDP-L-ribitol pyrophosphorylase A.
  
   
 0.517
pomt2
Protein-O-mannosyltransferase 2.
   
  
 0.506
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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