anapc5 protein (Seriola dumerili) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

anapc5

Anaphase promoting complex subunit 5. (773 aa)

Predicted Functional Partners:

anapc4

0.999

anapc11

0.999

anapc7

0.999

anapc2

0.999

cdc23

0.999

cdc16

0.999

anapc10

0.999

anapc1

0.999

cdc27

0.999

anapc13

0.996

Your Current Organism:

Seriola dumerili

NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
anapc1	anapc10	ENSSDUP00000026970	ENSSDUP00000015661	Anaphase promoting complex subunit 1.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.999
anapc1	anapc11	ENSSDUP00000026970	ENSSDUP00000005395	Anaphase promoting complex subunit 1.	APC11 anaphase promoting complex subunit 11 homolog (yeast).	0.999
anapc1	anapc13	ENSSDUP00000026970	ENSSDUP00000030166	Anaphase promoting complex subunit 1.	Anaphase promoting complex subunit 13.	0.993
anapc1	anapc2	ENSSDUP00000026970	ENSSDUP00000007830	Anaphase promoting complex subunit 1.	Anaphase promoting complex subunit 2; Belongs to the cullin family.	0.999
anapc1	anapc4	ENSSDUP00000026970	ENSSDUP00000000700	Anaphase promoting complex subunit 1.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.999
anapc1	anapc5	ENSSDUP00000026970	ENSSDUP00000000193	Anaphase promoting complex subunit 1.	Anaphase promoting complex subunit 5.	0.999
anapc1	anapc7	ENSSDUP00000026970	ENSSDUP00000005807	Anaphase promoting complex subunit 1.	Anaphase promoting complex subunit 7.	0.993
anapc1	cdc16	ENSSDUP00000026970	ENSSDUP00000013255	Anaphase promoting complex subunit 1.	Cell division cycle 16 homolog (S. cerevisiae).	0.999
anapc1	cdc23	ENSSDUP00000026970	ENSSDUP00000009694	Anaphase promoting complex subunit 1.	CDC23 (cell division cycle 23, yeast, homolog).	0.999
anapc1	cdc27	ENSSDUP00000026970	ENSSDUP00000033003	Anaphase promoting complex subunit 1.	Cell division cycle 27.	0.999
anapc10	anapc1	ENSSDUP00000015661	ENSSDUP00000026970	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Anaphase promoting complex subunit 1.	0.999
anapc10	anapc11	ENSSDUP00000015661	ENSSDUP00000005395	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	APC11 anaphase promoting complex subunit 11 homolog (yeast).	0.999
anapc10	anapc13	ENSSDUP00000015661	ENSSDUP00000030166	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Anaphase promoting complex subunit 13.	0.999
anapc10	anapc2	ENSSDUP00000015661	ENSSDUP00000007830	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Anaphase promoting complex subunit 2; Belongs to the cullin family.	0.999
anapc10	anapc4	ENSSDUP00000015661	ENSSDUP00000000700	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Anaphase-promoting complex subunit 4; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. Belongs to the APC4 family.	0.999
anapc10	anapc5	ENSSDUP00000015661	ENSSDUP00000000193	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Anaphase promoting complex subunit 5.	0.999
anapc10	anapc7	ENSSDUP00000015661	ENSSDUP00000005807	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Anaphase promoting complex subunit 7.	0.999
anapc10	cdc16	ENSSDUP00000015661	ENSSDUP00000013255	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Cell division cycle 16 homolog (S. cerevisiae).	0.999
anapc10	cdc23	ENSSDUP00000015661	ENSSDUP00000009694	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	CDC23 (cell division cycle 23, yeast, homolog).	0.999
anapc10	cdc27	ENSSDUP00000015661	ENSSDUP00000033003	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	Cell division cycle 27.	0.999