STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tph2Tryptophan hydroxylase 2 (tryptophan 5-monooxygenase). (465 aa)    
Predicted Functional Partners:
LOC111220577
Pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha.
  
 0.981
PCBD2
Pterin-4 alpha-carbinolamine dehydratase 2.
  
 0.981
qdpr
Quinoid dihydropteridine reductase a.
    
 0.943
LOC111230933
Uncharacterized protein.
   
 
 0.937
LOC111221189
Sepiapterin reductase b.
   
 
 0.937
tdo2
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
  
 
 0.931
LOC111230009
Indoleamine 2,3-dioxygenase 1.
   
 
 0.931
dhfr
Dihydrofolate reductase.
     
 0.905
LOC111228663
Zgc:153031.
     
 0.905
LOC111224606
Aldo-keto reductase family 1, member B1 (aldose reductase), tandem duplicate 2.
   
 
  0.902
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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