STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnajc5DnaJ (Hsp40) homolog, subfamily C, member 5aa. (199 aa)    
Predicted Functional Partners:
tfip11
Tuftelin-interacting protein 11; Involved in pre-mRNA splicing, specifically in spliceosome disassembly during late-stage splicing events. Belongs to the TFP11/STIP family.
    
 
 0.816
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.806
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.770
plrg1
Pleiotropic regulator 1.
    
 
 0.760
prpf19
Pre-mRNA processing factor 19.
    
   0.758
bud31
BUD31 homolog.
    
   0.758
ENSSDUP00000011941
Si:ch211-199o1.2.
 
 0.754
snw1
SNW domain containing 1.
    
 
 0.749
LOC111238863
Uncharacterized protein; Belongs to the heat shock protein 70 family.
 
 0.746
HSPA8
Heat shock protein 8; Belongs to the heat shock protein 70 family.
 
 0.744
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.