STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
qsox1Sulfhydryl oxidase. (815 aa)    
Predicted Functional Partners:
fam20a
FAM20A golgi associated secretory pathway pseudokinase.
     
 0.602
fam20b
FAM20B glycosaminoglycan xylosylkinase.
     
 0.515
gfer
Sulfhydryl oxidase.
      
 0.465
LOC111220430
Fam20C domain-containing protein.
     
 0.451
LOC111227056
FAM20C golgi associated secretory pathway kinase a.
     
 0.451
LOC111237365
Si:dkey-34e4.1.
      
 0.424
nos1ap
Nitric oxide synthase 1 (neuronal) adaptor protein b.
      
 0.424
LOC111227516
PID domain-containing protein.
      
 0.424
lsm1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
      
 0.424
LOC111218078
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.406
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.