STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab4aRAB4a, member RAS oncogene family. (213 aa)    
Predicted Functional Partners:
rbsn
Rabenosyn, RAB effector.
    
 0.985
rufy1
RUN and FYVE domain containing 1.
    
 0.966
LOC111217580
Intersectin 2b.
    
 0.825
itsn2
Intersectin 2a.
    
 0.825
itsn1
Intersectin 1 (SH3 domain protein).
    
 0.723
tbc1d16
TBC1 domain family, member 16.
    
 0.715
ENSSDUP00000004365
Uncharacterized protein.
   
 0.692
LOC111239516
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.682
mst1r
Macrophage stimulating 1 receptor b.
   
 0.681
met
MET proto-oncogene, receptor tyrosine kinase.
   
 0.681
Your Current Organism:
Seriola dumerili
NCBI taxonomy Id: 41447
Other names: S. dumerili, greater amberjack
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.